Infectious disease & surveillance

MalariaGEN & PlasmoDB

Malaria genomics resources
"Genomics of the malaria parasite, vector and host."
malariaparasitefunctional-genomics

About the resource

MalariaGEN — the Malaria Genomic Epidemiology Network, co-ordinated from the Wellcome Sanger Institute — is a global partnership generating and sharing genomic data on the malaria parasite (Plasmodium falciparum, P. vivax), its Anopheles vectors and the human host. Its open releases (MalariaGEN Pf, Pv, Ag and others) underpin much of contemporary malaria-genomics research, including drug-resistance surveillance.

PlasmoDB, part of the VEuPathDB family at the Eukaryotic Pathogen, Vector and Host Informatics Resource, is the functional-genomics workbench for Plasmodium — genomes, annotations, transcriptomics, proteomics, phenotypes and a comprehensive query and analysis environment. Together they form the data substrate of malaria research.

What you'd use it for

  1. 01Run drug-resistance surveillance across global P. falciparum samples
  2. 02Mine PlasmoDB transcriptomics for life-cycle stage expression
  3. 03Combine vector (Anopheles) and parasite genomics for transmission modelling
  4. 04Pull MalariaGEN data into custom population-genetics pipelines

How you access it

MalariaGEN release downloadsPlasmoDB web UI + APIsVEuPathDB workspaces

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