Category · 7 resources

Cancer databases

Somatic mutation catalogues, multi-omic cohort atlases, precision-oncology knowledge bases and population surveillance — the data infrastructure of cancer research and treatment.

COSMIC

cancer.sanger.ac.uk
Catalogue of Somatic Mutations in Cancer

The world's most comprehensive resource for somatic mutations in human cancer, drawing on tens of thousands of publications and large studies. Includes the Cancer Gene Census, Mutational Signatures, Cancer Mutation Census and Actionability resources.

See alsoTCGA · OncoKB & CIViC · ICGC / ARGO / PCAWG

TCGA

portal.gdc.cancer.gov
The Cancer Genome Atlas

A landmark NCI/NHGRI program that characterised more than 20,000 primary tumors and matched normals across 33 cancer types using multi-omics, with data accessible through the GDC (Genomic Data Commons) and downstream portals.

See alsocBioPortal · ICGC / ARGO / PCAWG · SEER

cBioPortal

cbioportal.org
Cancer genomics exploration

Originally developed at MSK, provides interactive web-based exploration of large cancer genomics datasets (TCGA, MSK-IMPACT and many others), with visual tools for mutations, copy number, expression, methylation, clinical data and survival.

See alsoTCGA · OncoKB & CIViC

ICGC / ARGO / PCAWG

icgc-argo.org
International Cancer Genome Consortium

The International Cancer Genome Consortium aggregates cancer genome data across countries; the Pan-Cancer Analysis of Whole Genomes (PCAWG) extended this to whole-genome sequences of more than 2,800 cancers, with strong coverage of noncoding and structural variation.

See alsoTCGA · COSMIC

OncoKB & CIViC

oncokb.org · civicdb.org
Precision-oncology knowledge bases

Precision-oncology knowledge bases curating the clinical significance of cancer variants — therapeutic, diagnostic and prognostic implications. CIViC is open and community-edited; OncoKB is FDA-recognised in part.

See alsoCOSMIC · cBioPortal